OS X :: Malware Message From Safari On My Website?

This is my first post, thanks in advance for any help. Hope I can explain correctly. I don't think my site [URL]actually ever had malware. I (not knowing better) placed a small *.exe file on my site via ftp just to transfer it from home to work. Anyway I think it caused me to get listed with google as having malware etc. (even though it was no type of dangerous file). I registered with googles webmaster tools, deleted it off my site and requested they re-scan it. Well that seams to have worked and all is fine except with Safari. I am still getting the malware notice with Safari only. I have cleared history, emptied the cache, deleted cookies and reset safari. Still getting the message. Sometimes I can open the site fine then click home and it pops up again. I really think my site is completely fine but I cant figure out why its still doing this with Safari. Needless to say this is terrible for business.